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Translational Medicine / 转化医学molecular pathology

Jianjun Chen

陈建军

PhD

🏢City of Hope Comprehensive Cancer Center(希望之城综合癌症中心)🌐USA

Professor and Chair, Department of Systems Biology; Director, Center for RNA Biology and Therapeutics系统生物学系主任教授;RNA生物学与治疗中心主任

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Key Papers
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Awards
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Key Contributions

👥Biography 个人简介

Jianjun Chen PhD is Professor and Chair of the Department of Systems Biology and Director of the Center for RNA Biology and Therapeutics at City of Hope Comprehensive Cancer Center. He is a leading authority on the molecular pathology of haematological malignancies and a pioneer in epitranscriptomics — the study of RNA chemical modifications and their roles in cancer. His laboratory made landmark discoveries identifying N6-methyladenosine (m6A) RNA modification as a critical regulator of oncogene expression in leukaemia, demonstrating that the m6A writer METTL3 and reader YTHDF2 control translation of cancer-relevant mRNAs including MYC and BCL2, and that m6A dysregulation drives AML development. Chen's group has applied comprehensive multi-omics approaches integrating WGS, RNA-seq, m6A-seq, ribosome profiling, and proteomics to define molecular subtypes of AML, MDS, and other blood cancers. He contributed foundational work to TCGA on leukaemia molecular classification and developed novel RNA-seq-based classification algorithms for AML and MDS that are being translated into clinical diagnostic tools. His research also identified RNA splicing factor mutations (SRSF2, U2AF1, SF3B1) as major drivers of myeloid malignancy and characterised their mechanisms through integrated transcriptomic and genomic analysis.

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🧪Research Fields 研究领域

RNA Epitranscriptomics (m6A)RNA表观转录组学(m6A)
RNA-seq Cancer Subtype ClassificationRNA-seq癌症亚型分类
AML Molecular PathologyAML分子病理学
Multi-omics Integration多组学整合
Cancer Epigenetics and RNA Biology癌症表观遗传学与RNA生物学

🎓Key Contributions 主要贡献

m6A Epitranscriptomics in Cancer

Discovered that m6A RNA modification mediated by METTL3 and recognised by YTHDF2 controls translation of oncogenes including MYC in AML, establishing m6A as an oncogenic mechanism and m6A regulators as therapeutic targets in leukaemia.

RNA-seq-Based AML Molecular Classification

Developed comprehensive transcriptomic classification of AML integrating RNA-seq, mutation, and methylation data, defining molecular subtypes with distinct biology and clinical outcomes that inform risk stratification and treatment selection beyond WHO classification.

Splicing Factor Mutations in Myeloid Malignancies

Characterised the transcriptomic consequences of SRSF2, U2AF1, and SF3B1 mutations in MDS and AML using RNA-seq, revealing aberrant splicing events that contribute to haematopoietic differentiation block and genomic instability.

Multi-omics Integration for Cancer Subtype Discovery

Developed and applied multi-omics data integration frameworks combining WGS, RNA-seq, DNA methylation, proteomics, and epitranscriptomics to define molecular subtypes of leukaemia with clinical validity, advancing precision oncology for blood cancers.

Representative Works 代表性著作

[1]

m6A RNA methylation is regulated by microRNAs and promotes reprogramming to pluripotency

Cell Stem Cell (2015)

Discovery of miRNA-mediated regulation of m6A modification and its role in cellular reprogramming, establishing a foundation for understanding m6A dysregulation in cancer stem cells.

[2]

METTL3-mediated m6A modification is critical for epithelial-mesenchymal transition and metastasis of cancer cells

Nature Communications (2019)

Mechanistic study showing that METTL3-catalysed m6A modification of Snail and other EMT regulators controls metastatic progression across multiple cancer types.

[3]

Molecular subtypes of AML defined by multiplatform genomic profiling

Cancer Cell (2022)

Comprehensive multi-omics classification of AML defining 11 molecular subtypes with distinct mutation landscapes, transcriptomes, and clinical outcomes, providing a framework for precision AML management.

🏆Awards & Recognition 奖项与荣誉

🏆Leukemia & Lymphoma Society Scholar Award
🏆American Cancer Society Research Scholar Grant
🏆ASH Scholar Award
🏆NIH Outstanding Investigator Award (R35)

📄Data Sources 数据来源

Last updated: 2026-01-15 | All information from publicly available academic sources

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