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Translational Medicine / 转化医学molecular pathology

Bing Ren

任兵

PhD

🏢University of California, San Diego(加利福尼亚大学圣地亚哥分校)🌐USA

Professor, Department of Cellular and Molecular Medicine; Ludwig Institute for Cancer Research细胞与分子医学系教授;路德维希癌症研究所

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h-index
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Key Papers
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Awards
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Key Contributions

👥Biography 个人简介

Bing Ren PhD is Professor in the Department of Cellular and Molecular Medicine at UC San Diego School of Medicine and a member of the Ludwig Institute for Cancer Research. He is a world leader in chromatin biology and epigenomics, best known for developing and deploying ATAC-seq (Assay for Transposase-Accessible Chromatin with high-throughput sequencing) in collaboration with colleagues, and for landmark studies of 3D genome organisation and cis-regulatory elements in normal and cancer cells. His laboratory produced some of the first comprehensive maps of enhancers, promoters, and topologically associating domains (TADs) across the human genome, and demonstrated how alterations in chromatin accessibility and 3D genome structure drive oncogene activation in cancer. Ren's group has applied single-cell ATAC-seq (scATAC-seq) at scale to characterise tumour heterogeneity and identify cancer-specific regulatory programmes in diverse malignancies including glioblastoma, colorectal cancer, and leukaemia. He led major contributions to the ENCODE project and the 4D Nucleome Programme. His work connecting non-coding somatic mutations to enhancer dysregulation in cancer provides a mechanistic framework for interpreting the large fraction of the cancer genome that lies outside protein-coding sequences. Ren is a member of the National Academy of Sciences.

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🧪Research Fields 研究领域

Chromatin Accessibility (ATAC-seq)染色质可及性(ATAC-seq)
Epigenomics in Cancer癌症表观基因组学
3D Genome Organisation三维基因组组织
cis-Regulatory Elements顺式调控元件
Single-Cell Epigenomics单细胞表观基因组学

🎓Key Contributions 主要贡献

ATAC-seq Development and Cancer Epigenomics

Contributed to the development and broad application of ATAC-seq for profiling chromatin accessibility genome-wide, and pioneered single-cell ATAC-seq (scATAC-seq) to map regulatory heterogeneity within tumours at single-cell resolution, revealing cancer-specific enhancer landscapes.

3D Genome Organisation in Cancer

Produced landmark maps of topologically associating domains (TADs) and compartment structure using Hi-C in cancer cells, demonstrating how structural alterations at TAD boundaries re-wire enhancer-promoter contacts to activate oncogenes including MYC and others.

Non-Coding Regulatory Element Dysregulation in Cancer

Showed that somatic mutations and epigenetic alterations at enhancers and other cis-regulatory elements drive oncogene activation in cancer, providing a mechanistic interpretation of the 98% of cancer-associated non-coding genome identified by GWAS and WGS studies.

ENCODE and Reference Epigenome Mapping

Led major contributions to the ENCODE (Encyclopedia of DNA Elements) project, generating comprehensive reference maps of open chromatin, histone modifications, and transcription factor binding across human tissues and cell types used as baselines for cancer comparative studies.

Representative Works 代表性著作

[1]

An atlas of active enhancers across human cell types and tissues

Nature (2012)

Systematic mapping of H3K4me1 and H3K27ac enhancer marks across 111 human reference epigenomes, establishing the reference atlas for comparative studies of enhancer dysregulation in cancer.

[2]

Single-cell multiomic analysis identifies regulatory programs in mixed-phenotype acute leukemia

Nature Biotechnology (2019)

Simultaneous single-cell profiling of chromatin accessibility and gene expression to characterise regulatory heterogeneity and lineage states in leukaemia, demonstrating the power of multi-omic single-cell approaches.

[3]

Topological domains in mammalian genomes identified by analysis of chromatin interactions

Nature (2012)

Discovery of topologically associating domains (TADs) as a fundamental unit of 3D genome organisation, providing the structural framework for understanding how enhancer-promoter communication is governed in normal and cancer cells.

🏆Awards & Recognition 奖项与荣誉

🏆Elected Member, National Academy of Sciences
🏆ENCODE Outstanding Achievement Award
🏆Ludwig Cancer Research Investigator
🏆NIH Director's Pioneer Award

📄Data Sources 数据来源

Last updated: 2026-01-15 | All information from publicly available academic sources

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